Honestly? I really would caution against increasing the damage or AP any. You have a good chance of throwing balance right out the door with that. My advice? Assuming this is a Katana weapon focus, allow the fire effect to change the DV to (STR+3)P(Fire), and leave the rest as is. You're already getting the dice bonuses (and the ability to hit spirits) from the weapon focus thing, and the coolness of having a sword with fire on it that isn't an AR skin or a spell effect. That's pretty fragging epic, for a Shadowrun weapon, ESPECIALLY one in the hands of a shadowrunner that isn't a pet of one of the megacorps. But prismite is right, if you try adding the force to the DV and AP, you're going to get insane numbers. For instance, say you have a combat mage with STR 4, and their katana is a Force 4 weapon focus with the fire and what not, using that ruling. That makes it a BASE damage of 11P, -7 AP, doing +1 per net hit as normal. That means you're doing more damage with a sword than the street sammy is with a Medium Machine Gun and APDS ammo. Then you have spells like Increase STR, Analyze Device, and so on. It starts getting nasty, fast. And then you have the sickening realization that this could apply to other weapons, too, like a Monofilament Whip. Which (assuming all things being equal) would start at 16P, -12 AP, or BETTER DAMAGE THAN AN ASSAULT CANNON. And this is just at Force 4, not nearly the most powerful weapon focus that could be made. And after the rest of the group sees him waving that around, they're going to want the same thing, so they can keep up, and suddenly you're in a Shadowrun game where Immortal Elves and megacorps come to YOU for the latest toys.
There is "This would be pretty cool!" and then there's "Heh, let's give this level 8 character Bracers of Relentless Might and a +6 Flaming Blast Icy Blast Vorpal Scimitar!" Sometimes, no matter how hard the player works, and no matter how cool it is, a bad idea is still a bad idea. Keep the damage the same, but let it be fire instead of normal, and he'll have his badass weapon without breaking the game, or getting the rest of the group starting to want similarly broken items.