In regards to what a hacker could do to your 'ware:
If I gain admin access to your laptop, I can not only access the programmed functions, I can alter them. So, for example, Wired Reflexes are directly controlling your central nervous system. If I decide I want to, I could kick it into turbo drive by disabling safety systems and changing a few lines of code, and throw you into a massive seizure. Now this would likely be an Exploit to bypass the embedded safety programming, but once you are in as an Admin, you can do whatever you want. I would likely make my first move locking out the DNI connection, so whatever I do, the character could not use the 'Ware again until it gets wirelessly recaptured, a task made very difficult by my turning off wireless after I finish sabotaging the poor bastard as much as I possibly can.
What most of you, I think, please correct me if I am wrong, are thinking of is Spoof, which allows you to send a single command. That would be on/off, or spam the system with lots of silliness to distract and confuse the character. You do NOT want your cyberware truly hacked, because then whatever biological function it's controlling is under someone else's control, not yours.
Now, your mileage may vary, but if someone gains admin access, the device is theirs.