The thing about Matrix Perception is you get to ask questions, one per hit. If your Perception is looking for Silent Running icons and you get 2 hits, your questions could be 'What Icons are Running Silent?' (or similar, pretty much needed for using it for looking for Silent Running Icons) and 'What of these isn't an RFID tag?' Which by how Demi-GOD's doing it in Data Trails is the only way we have rules for doing that. Conversely, if you can exclude a type of Silent Running Icon, you can exclude all but one type. The second question would change to 'Which of these are imaging devices?' or 'Which of these are weapons?' or 'Which of these are augmentations?'. If you can exclude a certain type there is no good in world reason you can't exclude everything but one type. Many things would fall under multiple types. Cybereyes would be both imaging devices and augmentations, if they have a weapon installed they would also be that, though you could argue that the eye laser (or whatever) would have it's own icon. A Camera sensor would fall under both Sensors, and visual devices.
Now you could argue that only Demi-GOD's can do that, in which case you have the issue of 100 silent running RFID tags providing all the Matrix security someone needs. Or if you say that you can only exclude things, then you end up with RFID, extra sensors, someones rappelling gloves with wireless on (everything that isn't a throwback after all), and so on all running silent, all of them small, and all of them on that list you now have of silent running icons that you can only exclude specific types of things from.