Thank you for reminding me; I'd forgotten how far the UCAS military had gotten.
Simply put, there isn't going to be a 'flood' out the doors; the Army already controlled anything but a near-death plunge from 10+ stories up. Which makes getting out less a 'fly be free' than it would be a 'line up to be processed.' Remember, these are people who, for the last 509 days -- not quite a year and a half -- have been living an 'obey or die' existence. And all the ones who are going to be critical for the AI are going to be plugged in, ideally in the midst of dozens of other non-critical plugged-in individuals.
Clearing the arcology was indeed still a floor-by-floor cleanup, and dealing with things undoubtedly did get easier -- the level of coordination simply went down. And yes, people got sent out, penetrating 'exit security' with in some cases what must have been relative ease; the head of the Greens was outside the Arcology, for heaven's sake. But I would put forth that since a) Deus wouldn't have had such hands-on control of his people, and b) getting the Network out into the rest of the world was the very core and reason for the entire Arcology takeover. Screw the Greens, the Blues, the Whites -- all of them were tools, told a mixture of truth and lies in whatever proportion was required to get their whole-hearted, willing cooperation.
Everything -- everything -- was about the Network.
Making certain they a) get out safely, then b) remain safe while c) recompiling him outside the Arcology was his ultimate priority. And after that, well -- they too were disposable.
I suppose what I consider, as a GM and as a hopeful freelancer, is what's more frightening -- that the AI just did really good cyberware and implanted that in people? Or that the AI reprogrammed people's brains??